Can't get it to install properly (maybe) or run

[Zahdia]

Hi, I'm using Mageia 2.0. I have tried to install the program and after overcoming a bunch of errors, I'm still getting an error message when I try to run the program.

Here is the program message:

[adna@localhost Sample_A2]$ pandaseq -f A2_ACGCAAC-TCTAGTT_L001_R1_001.fastq -r A2_ACGCAAC-TCTAGTT_L001_R2_001.fastq
INFO    VER     pandaseq 2.0 <andre@masella.name>
STAT    TIME    Thu May 30 19:30:25 2013
STAT    ELAPSED 0
STAT    READS   0
ERR     STOP    Could not parse: "HWI-1KL153:42:H0NR6ADXX:1:1101:2784:1986 1:N:0:ACGCAACTCTAGTT"
STAT    TIME    Thu May 30 19:30:25 2013
STAT    ELAPSED 0
STAT    READS   1
STAT    NOALGN  0
STAT    LOWQ    0
STAT    OK      0

Here is the info from the curl command:

Linux localhost.localdomain 3.4.45-server-1.mga2 #1 SMP Sun May 12 13:28:57 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
LSB Version:    *
Distributor ID: Mageia
Description:    Mageia 2
Release:        2
Codename:       thornicroft
which: no dpkg in (/usr/bin:/bin:/usr/local/bin:/usr/X11R6/bin/:/usr/games:/usr/lib64/qt4/bin:/home/adna/bin)
package *pandaseq* is not installed
/usr/bin/pandaseq

The original error when I installed was:

checking for lt_dlinit in -lltdl... no
configure: error: Cannot link with libtool libs! (libltdl)
So I installed lib64ltdl-devel-2.4.2-6.mga2.x86_64.rpm

Then the next error was

configure: error: *** bzlib.h is required, install bzip2 header files

But bzip2-1.0.6-1.mga2.x86_64 was already installed. So I installed all the packages with similar name using the Mageia packager adder gui.

And here is the code from installing it, which seemed like it is installed.... http://pastebin.com/ew9q2CgJ

Here is one of the fastq entries:

 @HWI-1KL153:42:H0NR6ADXX:1:1101:2784:1986 2:N:0:ACGCAACTCTAGTT
 CTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTACAACAAAATAATTCGCCAGAGGACTACTAGCAATAGCTTAAAACTCAAAGGACTTGGCGGTT
 +
 CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJIIFHHHFFFFFFEEEEEEDDDDDDCDDDDDDCDDBDCCDDDD09

[apmasell]

Okay. The header error is because the RPMs are really, really old; that bug has since been fixed, but I don't have a proper build environment for RPMs anymore.

According to the pastebin, it did install correctly. If you have both the RPMs and the source version installed, it will choose the RPM version, which is not what you want. Uninstall the PANDAseq RPM.

[apmasell]

Without further information, I'm going to close this. Please reopen if you still are interested.