issues
search
neuml
/
paperetl
📄 ⚙️ ETL processes for medical and scientific papers
Apache License 2.0
342
stars
27
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Can't insert all my data into sqlite database.
#56
kellytsorb
opened
2 months ago
0
.xml references not processed
#55
amscosta2022
opened
7 months ago
2
example data processing warning using google colab
#54
amscosta
opened
7 months ago
4
sample lines for running etl server and grobid instance
#53
amscosta
opened
7 months ago
1
Added note on grobid concurrency configuration to README.
#52
elshimone
closed
10 months ago
2
Use figure index rather than xml:id attribute this is not always present
#51
elshimone
closed
10 months ago
2
Scaling to create a proccess per cpu core overwhelms grobid service
#50
elshimone
closed
10 months ago
1
Zotero connection
#49
andreifoldes
closed
1 year ago
1
Update setup.py to only show standard image on PyPI
#48
davidmezzetti
closed
1 year ago
0
Update minimum Python version to 3.8
#47
davidmezzetti
closed
1 year ago
0
AttributeError: 'NoneType' object has no attribute 'upper'
#46
wmurphy126
closed
10 months ago
3
sqlite3.OperationalError: database is locked
#45
Chriszhangmw
closed
8 months ago
6
Update CORD-19 scripts
#44
davidmezzetti
closed
1 year ago
0
Add example notebook
#43
davidmezzetti
closed
1 year ago
0
Improve PMB filtering logic
#42
davidmezzetti
closed
1 year ago
0
Issue processing into Elasticsearch
#41
jak1502
closed
1 year ago
5
Require Python 3.7+
#40
davidmezzetti
closed
2 years ago
0
Support reading compressed files
#39
davidmezzetti
closed
2 years ago
0
Add multiprocessing support to files process
#38
davidmezzetti
closed
2 years ago
0
Add database flag to determine if database should be replaced
#37
davidmezzetti
closed
2 years ago
0
Remove legacy merge logic
#36
davidmezzetti
closed
2 years ago
0
Add pre-commit checks
#35
davidmezzetti
closed
2 years ago
0
Remove study attribute and design models and all related dependencies
#34
davidmezzetti
closed
2 years ago
0
Detect month changes in CORD-19 entry date process
#33
davidmezzetti
closed
3 years ago
0
Update CORD-19 entry dates source
#32
davidmezzetti
closed
3 years ago
0
Add common method for accessing Grammar object
#31
davidmezzetti
closed
3 years ago
0
Add generic CSV source
#30
davidmezzetti
closed
3 years ago
0
Improve sample size extraction
#29
davidmezzetti
closed
3 years ago
0
Support spaCy 3.0
#28
davidmezzetti
closed
2 years ago
2
Ensure length of sections is less than max nlp length
#27
davidmezzetti
closed
3 years ago
0
Fix bug with study model training
#26
davidmezzetti
closed
3 years ago
0
Fix bug with JSON export
#25
davidmezzetti
closed
3 years ago
0
Modify merge method to handle no update merges
#24
davidmezzetti
closed
3 years ago
0
Increase test coverage
#23
davidmezzetti
closed
3 years ago
0
Handle PDF parsing exceptions
#22
nialov
closed
3 years ago
8
Evaluate integrating with paperoni
#21
davidmezzetti
closed
2 years ago
1
Review and update README.md
#20
davidmezzetti
closed
3 years ago
1
Add pre-trained study design models to GitHub
#19
davidmezzetti
closed
3 years ago
2
Add component to build entry-dates.csv
#18
davidmezzetti
closed
3 years ago
0
Add arXiv as source
#17
davidmezzetti
closed
2 years ago
0
Add PubMed as source
#16
davidmezzetti
closed
2 years ago
0
Build test suite
#15
davidmezzetti
closed
3 years ago
0
Filter duplicate ids
#14
davidmezzetti
closed
3 years ago
0
Use XML id for file figure processing
#13
davidmezzetti
closed
3 years ago
0
Add file name as source for file process
#12
davidmezzetti
closed
3 years ago
0
Remove citations table/index
#11
davidmezzetti
closed
3 years ago
0
Feature: Incremental database update
#10
davidmezzetti
closed
3 years ago
0
Add dockerfile for building paperetl environment
#9
davidmezzetti
closed
3 years ago
0
Better error handling for parsing publication date
#8
davidmezzetti
closed
4 years ago
0
Recursively process files in input directory
#7
davidmezzetti
closed
4 years ago
0
Next