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neuml
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paperetl
📄 ⚙️ ETL processes for medical and scientific papers
Apache License 2.0
352
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27
forks
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Can't insert all my data into sqlite database.
#56
kellytsorb
opened
4 months ago
0
.xml references not processed
#55
amscosta2022
opened
8 months ago
2
example data processing warning using google colab
#54
amscosta
opened
8 months ago
4
sample lines for running etl server and grobid instance
#53
amscosta
opened
8 months ago
1
Added note on grobid concurrency configuration to README.
#52
elshimone
closed
11 months ago
2
Use figure index rather than xml:id attribute this is not always present
#51
elshimone
closed
11 months ago
2
Scaling to create a proccess per cpu core overwhelms grobid service
#50
elshimone
closed
11 months ago
1
Zotero connection
#49
andreifoldes
closed
1 year ago
1
Update setup.py to only show standard image on PyPI
#48
davidmezzetti
closed
1 year ago
0
Update minimum Python version to 3.8
#47
davidmezzetti
closed
1 year ago
0
AttributeError: 'NoneType' object has no attribute 'upper'
#46
wmurphy126
closed
11 months ago
3
sqlite3.OperationalError: database is locked
#45
Chriszhangmw
closed
10 months ago
6
Update CORD-19 scripts
#44
davidmezzetti
closed
1 year ago
0
Add example notebook
#43
davidmezzetti
closed
1 year ago
0
Improve PMB filtering logic
#42
davidmezzetti
closed
1 year ago
0
Issue processing into Elasticsearch
#41
jak1502
closed
1 year ago
5
Require Python 3.7+
#40
davidmezzetti
closed
2 years ago
0
Support reading compressed files
#39
davidmezzetti
closed
2 years ago
0
Add multiprocessing support to files process
#38
davidmezzetti
closed
2 years ago
0
Add database flag to determine if database should be replaced
#37
davidmezzetti
closed
2 years ago
0
Remove legacy merge logic
#36
davidmezzetti
closed
2 years ago
0
Add pre-commit checks
#35
davidmezzetti
closed
2 years ago
0
Remove study attribute and design models and all related dependencies
#34
davidmezzetti
closed
2 years ago
0
Detect month changes in CORD-19 entry date process
#33
davidmezzetti
closed
3 years ago
0
Update CORD-19 entry dates source
#32
davidmezzetti
closed
3 years ago
0
Add common method for accessing Grammar object
#31
davidmezzetti
closed
3 years ago
0
Add generic CSV source
#30
davidmezzetti
closed
3 years ago
0
Improve sample size extraction
#29
davidmezzetti
closed
3 years ago
0
Support spaCy 3.0
#28
davidmezzetti
closed
2 years ago
2
Ensure length of sections is less than max nlp length
#27
davidmezzetti
closed
3 years ago
0
Fix bug with study model training
#26
davidmezzetti
closed
3 years ago
0
Fix bug with JSON export
#25
davidmezzetti
closed
3 years ago
0
Modify merge method to handle no update merges
#24
davidmezzetti
closed
3 years ago
0
Increase test coverage
#23
davidmezzetti
closed
3 years ago
0
Handle PDF parsing exceptions
#22
nialov
closed
3 years ago
8
Evaluate integrating with paperoni
#21
davidmezzetti
closed
2 years ago
1
Review and update README.md
#20
davidmezzetti
closed
3 years ago
1
Add pre-trained study design models to GitHub
#19
davidmezzetti
closed
3 years ago
2
Add component to build entry-dates.csv
#18
davidmezzetti
closed
3 years ago
0
Add arXiv as source
#17
davidmezzetti
closed
2 years ago
0
Add PubMed as source
#16
davidmezzetti
closed
3 years ago
0
Build test suite
#15
davidmezzetti
closed
4 years ago
0
Filter duplicate ids
#14
davidmezzetti
closed
4 years ago
0
Use XML id for file figure processing
#13
davidmezzetti
closed
4 years ago
0
Add file name as source for file process
#12
davidmezzetti
closed
4 years ago
0
Remove citations table/index
#11
davidmezzetti
closed
4 years ago
0
Feature: Incremental database update
#10
davidmezzetti
closed
4 years ago
0
Add dockerfile for building paperetl environment
#9
davidmezzetti
closed
3 years ago
0
Better error handling for parsing publication date
#8
davidmezzetti
closed
4 years ago
0
Recursively process files in input directory
#7
davidmezzetti
closed
4 years ago
0
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