Open alyssadai opened 1 year ago
We want to keep our issues up to date and active. This issue hasn't seen any activity in the last 30 days.
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We have applied the _flag:stale
label to indicate that this issue should be reviewed again.
When you review, please reread the spec and then apply one of these three options:
flag:schedule
label to suggest moving this issue into the backlog nowsomeday
label to show that this won't be prioritized. The stalebot will ignore issues with this
label in the future. Use sparingly!
The
bids
command is currently very slow even for a few hundred subjects, primarily due to pybids (specifically the steps initializing the BIDS dataset). To make this more user-friendly we should add a progress bar for sub-processes of this command where possible.Since the
BIDSLayout
step does not have an easily accessible iterative process from which to track progress, we should instead consider implementing this for the for loops we use to merge subject-level BIDS and phenotypic info.https://typer.tiangolo.com/tutorial/progressbar/