Open surchs opened 1 year ago
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we need to add an explicit check for missing values for the tool / continuous column types - similar to what we have done for discrete values.
According to our current data dictionary docs + reference example .json, any phenotypic column that's not an identifier column can have annotated missing values (I believe the CLI allows this as well). Based on the
bulk_annotation_levels
gsheet, I see that there's at least one assessment tool (e.g., ds003823 "ses-pre_task-SART" column) with a missing value annotated. Not sure how/if these are currently handled.Steps:
bulk_annotation_levels
to give us a (better) chance of seeing missing values for columns about "age" or other numeric types"isPartOf"
) and age columns_Originally posted by @alyssadai in https://github.com/neurobagel/bulk_annotations/pull/24#discussion_r1255037484_