[BUG] adding new data `LOCAL_GRAPH_DATA` does not get uploaded to graph on stack restart

[surchs]

Is there an existing issue for this?

• [x] I have searched the existing issues

Expected Behavior

• I deploy a stack with the graph (e.g. full_stack)
• some new data appears
• I shut down my stack
• I add the new data to the directory specified in LOCAL_GRAPH_DATA in the .env
• I restart my stack

expect: new data is now in the graph / queryable

Current Behavior

data does not appear in the graph / is not queryable

Error message

none that I can see.

Environment

No response

How to reproduce

1. clone recipe, follow setup (i.e. change query url in .env), deploy full_stack, run a query against local node
2. shut the stack down
3. add a new .jsonld file in the data upload directory LOCAL_GRAPH_DATA
4. restart the stack
5. new dataset won't be visible in the query

Anything else?

No response

[surchs]

we think this wait-check breaks

https://github.com/neurobagel/recipes/blob/f7715a2eeee84b83e83139407151eafe86f80104/scripts/setup.sh#L7-L9

for one of two (or both) reasons

• after the first setup, this route is password protected, leading to auth error
• after the first setup, we will have some databases listed by this endpoint - possibly changing the response to no longer trigger the switch

so effectively the re-upload gets stuck

[neurobagel-bot[bot]]

:rocket: Issue was released in v0.0.1 :rocket: