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neurocausal / neurocausal_meta

the code base of neurocausal meta-analysis platform
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Tasks, Domains and Cognitive Ontology - on pause #5

Open vborghe opened 2 years ago

vborghe commented 2 years ago

@Sladja13 is the lead on this issue 🙏 Steps:

The work has started here.

vborghe commented 2 years ago

Hi there! This is the file that will be shared widely and used to merge/update/integrate our task list and the cognitive atlas one.

vborghe commented 1 year ago

Info from Ross and Russ:

This endpoint should be the authoritative source for tasks right now.: https://cognitiveatlas.org/api/task There is an old library that people still use that can make searching easier: https://github.com/CognitiveAtlas/cogat-python https://cogat-python.readthedocs.io/en/latest/ There isn't any documentation for the API, this is the easiest way to see what routes there are: https://github.com/poldracklab/cogat/blob/master/cognitive/apps/atlas/urls.py#L224

vborghe commented 1 year ago

Updated the shared file to contain:

Data (extracted as below) are also on OSF.

results = get_task()
results.pandas.to_csv('/Users/borghesani/Documents/4_Projects/NeuroCausal/all_tasks.csv')  

results = get_disorder()
results.pandas.to_csv('/Users/borghesani/Documents/4_Projects/NeuroCausal/all_disorders.csv')  

results = get_concept()
results.pandas.to_csv('/Users/borghesani/Documents/4_Projects/NeuroCausal/all_concepts.csv')
vborghe commented 1 year ago

The HiTOP framework (coming from psychiatry) might be interesting for the disorder part.

aammh16 commented 1 year ago

About the CognitiveAtlas_2.0.xlsx, All_Disorders file : Added two "Relationships" columns as in cog atlas and "Associated Disorders/Symptoms" for the ones that don't fit in there. The "kind" column is for a type classification of the terms by syndrome/symptoms (most are still labeled as "disorders").

The "Remarks" column can be filled with comments about the lines, what needs to be corrected is in red, while already corrected and added parts in blue.

aammh16 commented 1 year ago

shared file_cog atlas

TO DO LIST :