State of the art neuron segmentation algs - Githubissues

neurodata / brainlit

Method container for computational neuroscience on brains.

http://brainlit.neurodata.io/

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State of the art neuron segmentation algs #34

Closed tathey1 closed 3 years ago

tathey1 commented 4 years ago

There are several previously published neuron segmentation algorithms, we will be comparing our methods to those at some point, does anyone want to get started implementing them?

DeepNeuron: deep learning for light microscopy - https://www.ncbi.nlm.nih.gov/pubmed/29876679 -TrailMap: CNN for light microscopy - https://www.biorxiv.org/content/10.1101/812644v1 -Flood-filling networks: CNN made by google for EM - https://www.biorxiv.org/content/10.1101/200675v1.full.pdf, https://github.com/google/ffn -Ilastik - random forest for bioimage analysis - https://www.ilastik.org/

tathey1 commented 3 years ago

Replicate of https://github.com/neurodata/brainlit/projects/4