it is possible to apply ilastik in headless mode to preloaded arrays (here), maybe we should do this instead of saving images like in BrainLine and state_generation. I tried briefly but I think you need to use a conda environment to get the ilastik python package working.
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commented
1 year ago
it is possible to apply ilastik in headless mode to preloaded arrays (here), maybe we should do this instead of saving images like in BrainLine and state_generation. I tried briefly but I think you need to use a conda environment to get the ilastik python package working.