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neurodata / m2g

NeuroData's MRI to Graphs (m2g) - connectome estimation package and pipeline
https://docs.neurodata.io/m2g/
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group level analysis doesn't work on functional branch #173

Closed gkiar closed 6 years ago

gkiar commented 6 years ago

When running the container from #164, the group analysis doesn't run. This was attempted using the following command:

$ ndmg_bids ./bidsdir ./derivdir group dwi
Traceback (most recent call last):
  File "/usr/local/bin/ndmg_bids", line 11, in <module>
    load_entry_point('ndmg==0.2.0', 'console_scripts', 'ndmg_bids')()
  File "/usr/local/lib/python2.7/dist-packages/ndmg-0.2.0-py2.7-linux-x86_64.egg/ndmg/scripts/ndmg_bids.py", line 372, in main
  File "/usr/local/lib/python2.7/dist-packages/ndmg-0.2.0-py2.7-linux-x86_64.egg/ndmg/scripts/ndmg_bids.py", line 200, in group_level
NameError: global name 'modality' is not defined
ebridge2 commented 6 years ago

https://github.com/neurodata/ndmg/commit/9fe1a144aa23dd14237c1d06acb3d3c450182554 fixed for dmri and fmri