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neurodata
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maggot_models
Modeling Drosophila larval connectomes
BSD 3-Clause "New" or "Revised" License
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find more robust versions of metrics from paper
#64
bdpedigo
opened
4 years ago
0
add height of dendrograms as bic ratios
#63
bdpedigo
closed
3 years ago
0
run sf/faq-upper-triang on bhat
#62
bdpedigo
opened
4 years ago
0
load in new cell type labels
#61
bdpedigo
closed
3 years ago
0
visualize the condensed graph
#60
bdpedigo
closed
3 years ago
0
run more traditional community detection algs like louvain
#59
bdpedigo
opened
4 years ago
0
in signal flow plotting, add dots to margins indicating sensory/output
#58
bdpedigo
closed
3 years ago
0
look into ensemble clustering results
#57
bdpedigo
closed
3 years ago
0
use sensory inputs as a metric in clustering, e.g. measure step response for each sense and use that as feature
#56
bdpedigo
closed
3 years ago
0
check that same sensory inputs cluster together
#55
bdpedigo
closed
3 years ago
0
find smart way to deal with differing levels of sparsity in doing joint graph embedding
#54
bdpedigo
closed
3 years ago
0
enforce left/right pairs in same cluster
#53
bdpedigo
closed
3 years ago
0
compare global divisive hierarchical to hsbm method
#52
bdpedigo
opened
4 years ago
0
incorporate D to A and A to D graphs into clustering
#51
bdpedigo
closed
3 years ago
0
create new additional way of plotting cluster membership
#50
bdpedigo
closed
4 years ago
0
run jovo signal decay thingy
#49
bdpedigo
closed
3 years ago
0
once scipy comes, run FAQ-uppertriang
#48
bdpedigo
closed
4 years ago
0
find strongly connected components
#47
bdpedigo
closed
3 years ago
0
run signal flow on p_hat
#46
bdpedigo
closed
4 years ago
0
find maximal clique
#45
bdpedigo
closed
3 years ago
0
send travel dates
#44
bdpedigo
closed
4 years ago
0
write abstract
#43
bdpedigo
closed
4 years ago
0
plot hops to sensory vs hops to descending for each neuron
#42
bdpedigo
closed
4 years ago
1
incorporate signal flow as a dimension for clustering
#41
bdpedigo
opened
4 years ago
1
send michael JSONs for several of the new clusterings
#40
bdpedigo
closed
4 years ago
0
plot separate hclust runs (12 different kinds) as 12 different lines for each value of K
#39
bdpedigo
closed
3 years ago
0
fix DCSBM likelihood calculation
#38
bdpedigo
closed
3 years ago
0
plot fit SBMs as minigraph
#37
bdpedigo
closed
4 years ago
0
add marginal weighted average connection probabilities to heatmap of SBM probability matrix
#36
bdpedigo
closed
3 years ago
0
look into interactive sankey diagram
#35
bdpedigo
closed
3 years ago
0
compute ARI L/R for clustering experiments
#34
bdpedigo
closed
3 years ago
1
compute ARI K vs K-1 and plot for clustering exps
#33
bdpedigo
closed
4 years ago
0
for clustering experiments, plot unsupervised metrics:
#32
bdpedigo
closed
4 years ago
0
Try other type of spherical clustering (von mises distribution or something)
#31
bdpedigo
closed
3 years ago
0
double check on L/R projection proportions
#30
bdpedigo
closed
3 years ago
0
color neurons in CATMAID by signal flow rank
#29
bdpedigo
closed
3 years ago
0
after clustering, plot blocks sorted by mean/median signal flow
#28
bdpedigo
closed
3 years ago
0
after clustering, plot conditional marginal of signal flow
#27
bdpedigo
closed
4 years ago
0
run model selection
#26
bdpedigo
closed
3 years ago
0
find method to identify neurons that don't contribute to the feedforward pathway
#25
bdpedigo
closed
3 years ago
0
further split clustering sankey diagrams by other known classes
#24
bdpedigo
closed
4 years ago
0
formalize statistics of signal flow vs random network
#23
bdpedigo
closed
3 years ago
0
run partitional hgmm
#22
bdpedigo
closed
4 years ago
0
run gmm with max clusters = 100 (carey)
#21
bdpedigo
closed
4 years ago
1
see which neurons "move" most in clustering when comparing A->D vs other combinations
#20
bdpedigo
closed
3 years ago
0
compare clustering to strawman
#19
bdpedigo
closed
3 years ago
0
identify cells that send only ipsilateral or only contralateral
#18
bdpedigo
closed
3 years ago
0
look into exporting all metadata from CATMAID with the API
#17
bdpedigo
closed
3 years ago
0
plot degree sequence for whole brain
#16
bdpedigo
closed
4 years ago
0
Where in the brain are there L/R cells that DONT match
#15
bdpedigo
closed
3 years ago
0
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