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neurodata / ndgrutedb

Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI
http://neurodata.io
Apache License 2.0
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produce multiscale resolution graphs from MRN114 dataset for Zhengwu #124

Closed gkiar closed 8 years ago

gkiar commented 9 years ago

max ~10,000 nodes; min ~50 nodes;

wrgr commented 8 years ago

status update? Is this now trivial?

gkiar commented 8 years ago

It is trivial. I'll run the multiple resolutions the next chance I have the cluster free for my use.

Greg Kiar gkiar07@gmail.com

On Tue, Nov 24, 2015 at 10:49 AM, William Gray notifications@github.com wrote:

status update? Is this now trivial?

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-159310129.

jovo commented 8 years ago

great! let's discuss which atlases first?

gkiar commented 8 years ago

I was thinking:

Did you have any others in mind?

Greg Kiar gkiar07@gmail.com

On Tue, Nov 24, 2015 at 11:24 AM, joshua vogelstein < notifications@github.com> wrote:

great! let's discuss which atlases first?

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-159321579.

jovo commented 8 years ago

i'd like >=1 per order of magnitude. so, we got 1000, but not 10,000....maybe we need to make 10k from disa, rather than using other people's?

gkiar commented 8 years ago

Great. With Disa's downsample code I can/have generated one with 16k (16784) nodes, and one with 72k (72784). How's that?

Greg Kiar gkiar07@gmail.com

On Tue, Nov 24, 2015 at 1:11 PM, joshua vogelstein <notifications@github.com

wrote:

i'd like >=1 per order of magnitude. so, we got 1000, but not 10,000....maybe we need to make 10k from disa, rather than using other people's?

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-159359687.

jovo commented 8 years ago

awesome!

On Wed, Nov 25, 2015 at 11:05 AM, Greg Kiar notifications@github.com wrote:

Great. With Disa's downsample code I can/have generated one with 16k (16784) nodes, and one with 72k (72784). How's that?

Greg Kiar gkiar07@gmail.com

On Tue, Nov 24, 2015 at 1:11 PM, joshua vogelstein < notifications@github.com

wrote:

i'd like >=1 per order of magnitude. so, we got 1000, but not 10,000....maybe we need to make 10k from disa, rather than using other people's?

— Reply to this email directly or view it on GitHub <https://github.com/openconnectome/m2g/issues/124#issuecomment-159359687 .

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-159655901.

the glass is all full: half water, half air. neurodata.io

gkiar commented 8 years ago

http://openconnecto.me/data/public/MR/m2g_v1_1_2/MRN114/derivatives/sg/

jovo commented 8 years ago

amazeballs! did you email dunson? is there a documentation somewhere that lists all the atlases? maybe you can just embed your google doc for now?

gkiar commented 8 years ago

Was gonna write that email today, and I was thinking I'd just link them a view only copy of my atlas table, exactly. Will cc you on it when I send this morning. :)

Greg Kiar gkiar07@gmail.com

On Thu, Dec 3, 2015 at 10:56 PM, joshua vogelstein <notifications@github.com

wrote:

amazeballs! did you email dunson? is there a documentation somewhere that lists all the atlases? maybe you can just embed your google doc for now?

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-161867110.

jovo commented 8 years ago

Link them to the docs, which embeds or otherwise has that info. On Dec 4, 2015 8:41 AM, "Greg Kiar" notifications@github.com wrote:

Was gonna write that email today, and I was thinking I'd just link them a view only copy of my atlas table, exactly. Will cc you on it when I send this morning. :)

Greg Kiar gkiar07@gmail.com

On Thu, Dec 3, 2015 at 10:56 PM, joshua vogelstein < notifications@github.com

wrote:

amazeballs! did you email dunson? is there a documentation somewhere that lists all the atlases? maybe you can just embed your google doc for now?

— Reply to this email directly or view it on GitHub <https://github.com/openconnectome/m2g/issues/124#issuecomment-161867110 .

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/124#issuecomment-161970700.

gkiar commented 8 years ago

I embedded the atlas list in the email. Nowhere in docs does the atlas list exist - it can, if we add that to the long list :)