neurodata / ndgrutedb

Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI
http://neurodata.io
Apache License 2.0
29 stars 13 forks source link

Handle files with small b rather than b=0 #165

Closed gkiar closed 8 years ago

gkiar commented 8 years ago

At least some subset of HCP data, as well as others I'm sure, report the b=0 scans as truly being b=5 (normal b is often on the scale of 1000), but as much downstream processing depends on the b=0 locations this naturally breaks stuff since they can't be found. Will write a case to handle this in the initial parse b module and spit out a b values file that happies fsl/camino.