Fix output format of aligned images in setup script

neurodata / ndgrutedb

Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI

http://neurodata.io

Apache License 2.0

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Closed gkiar closed 8 years ago

gkiar commented 9 years ago

fsl returns .nii.gz images, the setup script names things as .nii images, so none of the images currently being produced can actually be read.

I am fixing this for existing files by renaming them so nibabel knows to uncompress them first.

@willgray