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neurodata / ndgrutedb

Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI
http://neurodata.io
Apache License 2.0
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add and document capability to process multiple atlases #85

Closed wrgr closed 9 years ago

wrgr commented 9 years ago

This is already supported by Disa's code. We just need to multiplex and keep track of things appropriately.

gkiar commented 9 years ago

Capability exists completely. We just need to swap in a new labeled Atlas in gengraph. @willgray either you can explain to me how LONI does the multiplexing in your experience or I can contact them directly?

I imagine it does what one would expect: have the larger (subject) list as the LSB and the Atlas as the MSB (i.e. iterates subjects for an Atlas, then on to the next Atlas), but much better safe than sorry here rather than mixing up subject names.

wrgr commented 9 years ago

We can sit down and work through this - I think we just want to export atlas name as part of file name so that there is no ambiguity. Also post HBM.

Basically, if we're going to go with the coins backed data store where people choose derivative + atlas + format, we're gonna have to add more structure and definition to our derivatives to put them in a retrievable/hostable format. This is probably the subject of an entire scrum sprint mid-summer.

Best, Will

On Sat, May 23, 2015 at 8:18 AM, Greg Kiar notifications@github.com wrote:

Capability exists completely. We just need to swap in a new labeled Atlas in gengraph. @willgray https://github.com/willgray either you can explain to me how LONI does the multiplexing in your experience or I can contact them directly?

I imagine it does what one would expect: have the larger (subject) list as the LSB and the Atlas as the MSB (i.e. iterates subjects for an Atlas, then on to the next Atlas), but much better safe than sorry here rather than mixing up subject names.

— Reply to this email directly or view it on GitHub https://github.com/openconnectome/m2g/issues/85#issuecomment-104887745.

gkiar commented 9 years ago

moved to asana