neurodata / ndstore

code for storing neurodata images and image annotations
http://neurodata.io
Apache License 2.0
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Large data requests #285

Closed wrgr closed 8 years ago

wrgr commented 8 years ago

There are several really great potential collaborators who would like to be able to pull down entire datasets (especially Kasthuri11 and annotations). Currently, the recommendation is to use ndio, but server latency can make this difficult, and even in the best case, is much slower (and intensive to the backend) than make prepopulated downloads.

Doing this client side is difficult because then we have to curate a bunch of different datasets ourselves and those humans are already pretty swamped! And we've had trouble with them going stale.

Could we make a channel export in the near future? What's the best near-term advice for folks? Could use some wisdom and help. @j6k4m8 @kunallillaney @jovo @Aeusman @randalburns

jovo commented 8 years ago

in the cloud data model, the slices live in S3, so there is no need for an 'export' function, people can download directly from the bucket if they want.

currently,

http://cloud.neurodata.io/nd/ca/public_tokens/

yields:

[ "blaze1", "kasthuri11" ]

so, in theory, they can get a version right now using that strategy.

note that i could be totally wrong.

On Friday, June 10, 2016, William Gray notifications@github.com wrote:

There are several really great potential collaborators who would like to be able to pull down entire datasets (especially Kasthuri11 and annotations). Currently, the recommendation is to use ndio, but server latency can make this difficult, and even in the best case, is much slower (and intensive to the backend) than make prepopulated downloads.

Doing this client side is difficult because then we have to curate a bunch of different datasets ourselves and those humans are already pretty swamped! And we've had trouble with them going stale.

Could we make a channel export in the near future? What's the best near-term advice for folks? Could use some wisdom and help. @j6k4m8 https://github.com/j6k4m8 @kunallillaney https://github.com/kunallillaney @jovo https://github.com/jovo @Aeusman https://github.com/Aeusman @randalburns https://github.com/randalburns

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/neurodata/ndstore/issues/285, or mute the thread https://github.com/notifications/unsubscribe/AACjctk5HQNCA8-6Z4R79dH4FEC-AJgUks5qKWLJgaJpZM4Iy7_N .

the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York

wrgr commented 8 years ago

yea - this is only image data in tiles/cuboids, so not in a format easy for new folks to use. (e.g., tiff/png)

kunallillaney commented 8 years ago

@willgray An email would help me help others. :)

jovo commented 8 years ago

better yet: anybody who wants anything from kunal please encourage them to create an issue for their request, and we will put it in the priority queue.

On Tue, Jun 28, 2016 at 2:19 PM, Kunal Lillaney notifications@github.com wrote:

@willgray https://github.com/willgray An email would help me help others. :)

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/neurodata/ndstore/issues/285#issuecomment-229136477, or mute the thread https://github.com/notifications/unsubscribe/AACjcrtUJdoEAY_z7GRS_8_uywRCCFNlks5qQWWXgaJpZM4Iy7_N .

the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York

wrgr commented 8 years ago

done. i encouraged issue creation and forwarded to kunal. to my knowledge i am now off the critical path on these requests, or at least not the bottleneck. :)

kunallillaney commented 8 years ago

Thanks.