Open alexbaden opened 8 years ago
Resolution 0 is still available...
http://dsp063.pha.jhu.edu/ocp/ca/Control239/Grayscale/xy/0/10000,11000/10000,11000/5/
...but the lower resolutions (1-5) are missing. I think @kunallillaney needs to repropagate the Grayscale channel.
@kkutten1 I think you can propagate it ?
On Wednesday, August 17, 2016, kkutten1 notifications@github.com wrote:
Resolution 0 is still available...
http://dsp063.pha.jhu.edu/ocp/ca/Control239/Grayscale/xy/0/ 10000,11000/10000,11000/5/
...but the lower resolutions 1-5 are missing. I think @kunallillaney https://github.com/kunallillaney just needs to repropagate the Grayscale channel.
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the glass is all full: half water, half air. neurodata.io, jovo calendar https://calendar.google.com/calendar/embed?src=joshuav%40gmail.com&ctz=America/New_York
@jovo @kkutten1 the docs to propagate are pretty clear. Send an email to @Aeusman and me if you have any questions.
@kunallillaney @Aeusman It won't let me propagate. Probably because the channel is readonly.
>>> import ndio.remote.neurodata as neurodata
>>> nd = neurodata()
>>> # Returns 0 indicating that token isn't propagated
>>> nd.get_propagate_status("Control239", "Grayscale")
u'0'
>>> nd.propagate("Control239", "Grayscale")
>>> # Should be 1 if propagation service started but returns 0
>>> nd.get_propagate_status("Control239", "Grayscale")
u'0'
Can you change readonly to 0. I don't think I have permissions to do it myself.
This functionality is available in the console if you have permissions there!
I don't have permissions there either :( I can only see projects that I created.
@kkutten1 Now it is not read-only.
I still can't propagate the Grayscale channel even though @kunallillaney has turned off readonly.
@kkutten1 Can you please be more specific on this? What request are you making and if there is an error what is it?
OK it appears to be working now as the following url returns 1
http://openconnecto.me/ocp/ca/Control239/Grayscale/getPropagate/
I initiated propagation using
http://openconnecto.me/ocp/ca/Control239/Grayscale/setPropagate/1/
Strangely this did not work when I used ndio.remote.neurodata.propagate() which may warrent further investigation. I'll close the issue once propagation is done
"Strangely"? I guess ndio version of propagate does not work. You can open an issue there to confirm. :)
So how long does propagate take? It's been over a week and the url
http://openconnecto.me/ocp/ca/Control239/Grayscale/getPropagate/
still returns '1'
@kkutten1 This is done now. the propagate was not the issue. This is an old channel format and someone changed the channel-id underneath(I can explain but does not concern this discussion).
Here is a sample cutout http://openconnecto.me/ocp/ca/Control239/xy/1/5000,6500/4500,5500/100/window/0,500/
@kunallillaney The resolutions 0 and 1 look fine
But the data for resolutions 2-5 is still missing
Can you change the channel-id for these resolutions as well?
Okay. I will check what is going on.
@alexbaden Can you migrate this to new schema from old channel? How hard is it?
It should be pretty easy, especially since we only have to migrate the base resolution. The catch is that I can't do the migration in place -- meaning, we'll need to do something like make a Control239new DB. But, we can either alias the old token, or rename the DB once the migration is done. I'll start the process this afternoon, based on past experience it should take about a day.
On Thu, Sep 1, 2016 at 11:33 AM Kunal Lillaney notifications@github.com wrote:
@alexbaden https://github.com/alexbaden Can you migrate this to new schema from old channel? How hard is it?
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FYI, checked in on the job again this morning. The migration is still running on res0.
http://dsp063.pha.jhu.edu/ocp/ca/Control239/Grayscale/xy/5/0,500/0,500/5/
It is theoretically properly windowed (at least, it is similar to all the rest of the CLARITY brains). I tried multiple window values, no dice.
I also tried a bunch of different z-indices, and all came up black. There is data in the DB though:
Any ideas?
( @kkutten1 @jovo )