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neurodata / synaptome-stats

Synaptome Statistics
http://docs.neurodata.io/synaptome-stats/
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start Y3 report #19

Closed jovo closed 8 years ago

jovo commented 8 years ago

sections:

always everything only on half the data

  1. data
  2. which dataset
  3. definition of markers
  4. how did puncta get to us (what computer vision)
  5. definition of features (with equations)
  6. feature exploration
  7. synapsin1 vs. synapsin2 in log domain and linear
  8. same for vglut1 & 2
  9. repeat the above 4 panel figure for each of the features
  10. kde plots of chosen transformation/feature pair
  11. marker exploration
  12. correlation matrix
  13. 2D scatter plot colored by truth
  14. 2D scatter plot colored by truth, overlay optimal voronoi diagram (fit using linear discriminant analysis, not kmeans)
  15. same as above in 3D
  16. ARI vs. dimension using optimal voronoi diagram
  17. synapse exploration
  18. kmeans (k=2) heatmap
  19. lattice plots of GABABR (fix colors)
  20. correlation matrices for each of the 2 clusters
  21. kmeans (k=2) for level 2
jovo commented 8 years ago

i think this is a cool plan. what do you think?

MrAE commented 8 years ago

That's a good looking outline.

MrAE commented 8 years ago

The skeleton is up.

MrAE commented 8 years ago

Moved issue to weekly-status-reports.