[BUG] Doughnut file should not be updated for all BIDS steps

neurodatascience / nipoppy

Lightweight framework for neuroimaging-clinical data organization/processing

https://nipoppy.readthedocs.io/en/latest/

MIT License

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Open michellewang opened 1 week ago

michellewang commented 1 week ago

Not sure how to really handle this but if each step had an option UPDATE_DOUGHNUT (false by default?) then that would work for the moment