search

neurodroid / stimfit

A program for viewing and analyzing electrophysiological data
GNU General Public License v2.0
52 stars 25 forks source link

An error has occured - couldn't initialize python shell - 0.15.8 (64 bit) beta #92

Closed Kemikal04 closed 1 year ago

Kemikal04 commented 2 years ago

I am having trouble running 0.15.8 (64 bit) beta for Windows on Windows 10 Home.

Error upon starting stimfit: 1) An error has occured - couldn't initialize python shell and following a click 2) an error has occured - can't create a window for the python shell pointer is zero"

"Traceback (most recent call last): File "", line 3, in File "embedded_stf.py", line 20, in from embedded_init import intro_msg File "embedded_init.py", line 16, in import numpy as np ImportError: No module named numpy"

I tried installing with admin privileges and directly installing python 2.7.14 directly from (https://www.python.org/downloads/release/python-2714/) - neither worked.

schloegl commented 2 years ago

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following: 1) uninstall stimfit 2) Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem. 3) reboot (not sure whether this is really needed) 4) reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

Kemikal04 commented 2 years ago

Hi Christoph,

thanks for the really fast reply!

I managed to fix it, but in a convoluted way.

First installed 0.15.8 (which didn't initialize the python shell)

Then I installed 0.14.14 (which was working a colleagues computer). This installs python 2.7.9.

I can then start 0.15.8 and the shell initializes.

[image: image.png]

Best,

Paul

On Mon, 17 Jan 2022 at 18:09, Alois Schlögl @.***> wrote:

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following:

  1. uninstall stimfit
  2. Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem.
  3. reboot (not sure whether this is really needed)
  4. reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

— Reply to this email directly, view it on GitHub https://github.com/neurodroid/stimfit/issues/92#issuecomment-1014744820, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHWFJOWMIJTBXC6OZNNBEM3UWREKZANCNFSM5MFCIGRQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

Kemikal04 commented 2 years ago

Sorry, Alois - I thought you were Christoph. Best, Paul

On Mon, 17 Jan 2022 at 18:16, Paul Turko @.***> wrote:

Hi Christoph,

thanks for the really fast reply!

I managed to fix it, but in a convoluted way.

First installed 0.15.8 (which didn't initialize the python shell)

Then I installed 0.14.14 (which was working a colleagues computer). This installs python 2.7.9.

I can then start 0.15.8 and the shell initializes.

[image: image.png]

Best,

Paul

On Mon, 17 Jan 2022 at 18:09, Alois Schlögl @.***> wrote:

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following:

  1. uninstall stimfit
  2. Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem.
  3. reboot (not sure whether this is really needed)
  4. reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

— Reply to this email directly, view it on GitHub https://github.com/neurodroid/stimfit/issues/92#issuecomment-1014744820, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHWFJOWMIJTBXC6OZNNBEM3UWREKZANCNFSM5MFCIGRQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

Kemikal04 commented 2 years ago

Hi Alois,

I now have another issue, which is the text does not fit in the boxes properly:

[image: image.png] Best,

Paul

On Mon, 17 Jan 2022 at 18:18, Paul Turko @.***> wrote:

Sorry, Alois - I thought you were Christoph. Best, Paul

On Mon, 17 Jan 2022 at 18:16, Paul Turko @.***> wrote:

Hi Christoph,

thanks for the really fast reply!

I managed to fix it, but in a convoluted way.

First installed 0.15.8 (which didn't initialize the python shell)

Then I installed 0.14.14 (which was working a colleagues computer). This installs python 2.7.9.

I can then start 0.15.8 and the shell initializes.

[image: image.png]

Best,

Paul

On Mon, 17 Jan 2022 at 18:09, Alois Schlögl @.***> wrote:

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following:

  1. uninstall stimfit
  2. Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem.
  3. reboot (not sure whether this is really needed)
  4. reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

— Reply to this email directly, view it on GitHub https://github.com/neurodroid/stimfit/issues/92#issuecomment-1014744820, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHWFJOWMIJTBXC6OZNNBEM3UWREKZANCNFSM5MFCIGRQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

Kemikal04 commented 2 years ago

it's more of an issue when trying to fit curves, etc.

[image: image.png]

On Mon, 17 Jan 2022 at 18:21, Paul Turko @.***> wrote:

Hi Alois,

I now have another issue, which is the text does not fit in the boxes properly:

[image: image.png] Best,

Paul

On Mon, 17 Jan 2022 at 18:18, Paul Turko @.***> wrote:

Sorry, Alois - I thought you were Christoph. Best, Paul

On Mon, 17 Jan 2022 at 18:16, Paul Turko @.***> wrote:

Hi Christoph,

thanks for the really fast reply!

I managed to fix it, but in a convoluted way.

First installed 0.15.8 (which didn't initialize the python shell)

Then I installed 0.14.14 (which was working a colleagues computer). This installs python 2.7.9.

I can then start 0.15.8 and the shell initializes.

[image: image.png]

Best,

Paul

On Mon, 17 Jan 2022 at 18:09, Alois Schlögl @.***> wrote:

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following:

  1. uninstall stimfit
  2. Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem.
  3. reboot (not sure whether this is really needed)
  4. reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

— Reply to this email directly, view it on GitHub https://github.com/neurodroid/stimfit/issues/92#issuecomment-1014744820, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHWFJOWMIJTBXC6OZNNBEM3UWREKZANCNFSM5MFCIGRQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

Kemikal04 commented 2 years ago

Ok, this is solved - was my issue.

[image: image.png]

On Mon, 17 Jan 2022 at 18:24, Paul Turko @.***> wrote:

it's more of an issue when trying to fit curves, etc.

[image: image.png]

On Mon, 17 Jan 2022 at 18:21, Paul Turko @.***> wrote:

Hi Alois,

I now have another issue, which is the text does not fit in the boxes properly:

[image: image.png] Best,

Paul

On Mon, 17 Jan 2022 at 18:18, Paul Turko @.***> wrote:

Sorry, Alois - I thought you were Christoph. Best, Paul

On Mon, 17 Jan 2022 at 18:16, Paul Turko < @.***> wrote:

Hi Christoph,

thanks for the really fast reply!

I managed to fix it, but in a convoluted way.

First installed 0.15.8 (which didn't initialize the python shell)

Then I installed 0.14.14 (which was working a colleagues computer). This installs python 2.7.9.

I can then start 0.15.8 and the shell initializes.

[image: image.png]

Best,

Paul

On Mon, 17 Jan 2022 at 18:09, Alois Schlögl @.***> wrote:

I can not reproduce this, I guess there is some conflict with some other python installation. Stimfit on windows is somehow picky and does not work well with ther python versions on the same system. The following approach might break some of your other python installations.

If you want to get stimfit running, I recommended the following:

  1. uninstall stimfit
  2. Delete c:\python2.7. This might contain some other than 2.7.14 python modules which cause the problem.
  3. reboot (not sure whether this is really needed)
  4. reinstall Stimfit I just tested this again on Windows 10, using the default install options, and can than start Stimfit.

I know that some user had also problems when Anaconda is also installed on the same system, and they managed to disentangle the different python versions somehow.

Do this hints help ?

— Reply to this email directly, view it on GitHub https://github.com/neurodroid/stimfit/issues/92#issuecomment-1014744820, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHWFJOWMIJTBXC6OZNNBEM3UWREKZANCNFSM5MFCIGRQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414

-- Paul Turko Ph.D - A.G. Vida

Charité - Universitätsmedizin Berlin Charité Crossover (CCO) Virchowweg 6, Raum: 03-204 10117 Berlin, Germany

Email: @.***

Work: (+49)30450528414