Due to data loss I have to re-run the ATAC-seq analysis. I lost the fastq files but I have the bam files which I can convert back to fastq, although I am missing 3 technical replicates:
E2-1_L008 (incorrect label in original analyses) --> E3_1_L008 (corrected label)
KO-2_L009 (incorrect label in original analyses) --> E2_2_L009 (corrected label)
KO-3_L008 (incorrect label in original analyses) --> E2_1_L009 (corrected label)
Due to data loss I have to re-run the ATAC-seq analysis. I lost the fastq files but I have the bam files which I can convert back to fastq, although I am missing 3 technical replicates: