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APOE_microglia
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Figure edits
#4
Closed
KittyMurphy
closed
4 months ago
KittyMurphy
commented
8 months ago
[x] In plot showing overlap between ATAC-seq and RNA-seq results, show only ATAC-seq DARs and overlap
[x] Show that APOE expression in APOE4-expressing microglia is significantly lower compared to APOE3
[x] Supplementary figure showing logFC correlation: set axis to -8,8 for all plots
[ ] WGCNA: run pathway enrichment analysis using IPA
[x] Run pathway enrichment analysis using DEGs and DARs
[x] Motif enrichment analysis: remove RNA-binding proteins in results
[x] plot s-LDSC results
[x] plot MAGMA results
[ ] check why the plot showing ATAC-seq RNA-seq overlap doesn't agree with the overlap values I get when I check manually
[x] chemokine/cytokine expression plots