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neurogenomics / CUT_n_TAG

Preprocessing pipeline for CUT&TAG data.
MIT License
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run nf-core/ataceq on CUT&TAG #4

Closed bschilder closed 2 years ago

bschilder commented 3 years ago

Run nf-core/atacseq pipeline on Di's test CUT&TAG data.

https://nf-co.re/atacseq/1.2.1/usage

bschilder commented 3 years ago

Resolved issues

Config file

Nextflow config file wasn't working on Imperial HPC. Had to hash out lines that specify medbio queue (bc I didn't access to that queue before). https://combiz.github.io/scflow-manual/infrastructure-configuration-1.html

design CSV formatting

Resolved here: https://github.com/nf-core/atacseq/issues/135