neurogenomics / CUT_n_TAG

Preprocessing pipeline for CUT&TAG data.
MIT License
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Run nf-core/cutandrun pipeline #8

Closed bschilder closed 2 years ago

bschilder commented 3 years ago

Dev release of nf-core/cutandrun pipeline now available. Full launch scheduled at the end of Jan.

However unable to run the test example on HPC. Same error message no matter how I run it:

-bash-4.2$  nextflow run nf-core/cutandrun -profile test
N E X T F L O W  ~  version 20.01.0
Launching `nf-core/cutandrun` [backstabbing_carlsson] - revision: 45316032bc [master]
Unknown config attribute `params.genomes.GRCh37.projectDir` -- check config file: /rds/general/user/bms20/home/.nextflow/assets/nf-core/cutandrun/nextflow.config

-bash-4.2$  nextflow run nf-core/cutandrun -profile test,singularity
N E X T F L O W  ~  version 20.01.0
Launching `nf-core/cutandrun` [ecstatic_bartik] - revision: 45316032bc [master]
Unknown config attribute `params.genomes.GRCh37.projectDir` -- check config file: /rds/general/user/bms20/home/.nextflow/assets/nf-core/cutandrun/nextflow.config

-bash-4.2$  nextflow run nf-core/cutandrun -profile test,singularity,imperial
N E X T F L O W  ~  version 20.01.0
Launching `nf-core/cutandrun` [scruffy_torricelli] - revision: 45316032bc [master]
Unknown config attribute `params.genomes.GRCh37.projectDir` -- check config file: /rds/general/user/bms20/home/.nextflow/assets/nf-core/cutandrun/nextflow.config

-bash-4.2$  nextflow run nf-core/cutandrun -profile imperial,test,singularity
N E X T F L O W  ~  version 20.01.0
Launching `nf-core/cutandrun` [nasty_mandelbrot] - revision: 45316032bc [master]
Unknown config attribute `params.genomes.GRCh37.projectDir` -- check config file: /rds/general/user/bms20/home/.nextflow/assets/nf-core/cutandrun/nextflow.config

Requested help from Slack channel here: https://nfcore.slack.com/archives/C01FKFZ57SA/p1611247052001200

bschilder commented 3 years ago

This nf-core repo is actually empty (thus the errors). The authors will let me know once it's been uploaded.