I spoke with Maria, and she said it would be helpful to output a featureCounts matrix for each consensus peak set. A featureCounts matrix will contain, for each consensus peak, the number of reads in the constituent BAM files that overlap with that peak. The matrix should be like this:
I spoke with Maria, and she said it would be helpful to output a featureCounts matrix for each consensus peak set. A featureCounts matrix will contain, for each consensus peak, the number of reads in the constituent BAM files that overlap with that peak. The matrix should be like this: