When EpiCompare::EpiCompare(blacklist=NULL), a blacklist can automatically be chosen based on the genome_build_output, assuming the blacklist is used only after the peaks/refs have been lifted over. We can make NULL the new default so it's one less arg users are required to add.
EpiCompare(blacklist=) can now take a variety of inputs (EpiCompare v1.3.3), but by default (NULL) it will automatically select the appropriate blacklist:
When
EpiCompare::EpiCompare(blacklist=NULL)
, a blacklist can automatically be chosen based on thegenome_build_output
, assuming the blacklist is used only after the peaks/refs have been lifted over. We can makeNULL
the new default so it's one less arg users are required to add.