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neurogenomics / EpiCompare

Comparison, benchmarking & QC of epigenetic datasets
https://doi.org/doi:10.18129/B9.bioc.EpiCompare
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`EpiCompare::EpiCompare`: Automatically choose blacklist #113

Closed bschilder closed 1 year ago

bschilder commented 1 year ago

When EpiCompare::EpiCompare(blacklist=NULL), a blacklist can automatically be chosen based on the genome_build_output, assuming the blacklist is used only after the peaks/refs have been lifted over. We can make NULL the new default so it's one less arg users are required to add.

bschilder commented 1 year ago

EpiCompare(blacklist=) can now take a variety of inputs (EpiCompare v1.3.3), but by default (NULL) it will automatically select the appropriate blacklist:

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