neurogenomics / EpiCompare

Comparison, benchmarking & QC of epigenetic datasets
https://doi.org/doi:10.18129/B9.bioc.EpiCompare
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Bioconductor checks failing on Linux: #121

Closed bschilder closed 1 year ago

bschilder commented 1 year ago

Apparently the Bioc server is having trouble installing data.table. Hopefully this is just a temporary issue that will resolve itself, notifying @serachoi1230 so you can keep an eye on it.

http://bioconductor.org/checkResults/release/bioc-LATEST/EpiCompare/nebbiolo2-checksrc.html

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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:EpiCompare.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings EpiCompare_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/EpiCompare.Rcheck’
* using R version 4.2.2 (2022-10-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘EpiCompare/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EpiCompare’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘data.table’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.16-bioc/meat/EpiCompare.Rcheck/00check.log’
for details.
bschilder commented 1 year ago

This has since been resolved automatically