neurogenomics / EpiCompare

Comparison, benchmarking & QC of epigenetic datasets
https://doi.org/doi:10.18129/B9.bioc.EpiCompare
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`EpiCompare::EpiCompare`: Consider add `run_all` arg #127

Closed bschilder closed 1 year ago

bschilder commented 1 year ago

Consider adding a new arg (eg. run_all) that turns on all features/plot without having to specify each argument manually.

bschilder commented 1 year ago

eg. inside EPCompare

if(isTRUE(run_all)){
stat_plot = FALSE,
  chromHMM_plot <- chipseeker_plot <- enrichment_plot <- tss_plot <- TRUE 
}
bschilder commented 1 year ago

new arg added:

#' @param run_all Convenience argument that enables all plots/features
#' (without specifying each argument manually)
#'  by overriding the default values.