Closed bschilder closed 1 year ago
I believe this is happening when the vignettes get rendered. Let me see if I can get rid of this by adding *vignettes/html to the .Rbuildignore.
This didn't seem to help: https://github.com/neurogenomics/EpiCompare/actions/runs/4368536514/jobs/7641247965
We have to change strategies and host the full vignette on another GitHub repo, and only provide the link (and perhaps a download button) in the vignette
I've now created EpiArchives: a new repo for storing EpiCompare reports: https://github.com/neurogenomics/EpiArchives
I've updated _vignettes/examplereport.Rmd so that it just renders the markdown landing page for EpiArchives
.
Some other random error now, even though this should be super simple. Will resort to copying the markdown content rather than trying to embed the page
pandoc: /EpiArchives/assets/css/style.css: withBinaryFile: does not exist (No such file or directory)
Error: processing vignette 'example_report.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘example_report.Rmd’
SUMMARY: processing the following file failed:
‘example_report.Rmd’
Error: Vignette re-building failed.
1. Bug description
I believe this is happening when the vignettes get rendered. Let me see if I can get rid of this by adding vignettes/html to the .Rbuildignore*.
Oddly, doesn't seem to occur locally (on my Mac) during checks.![Screenshot 2023-03-08 at 21 05 30](https://user-images.githubusercontent.com/34280215/223849747-12298e9d-4dc0-4567-9b48-34898b1e3bcf.png)
Console output
https://github.com/neurogenomics/EpiCompare/actions/runs/4366324072/jobs/7636174158#step:4:6765
Expected behaviour
(A clear and concise description of what you expected to happen.)
2. Reproducible example
Code
https://github.com/neurogenomics/EpiCompare/actions/runs/4366324072/workflow
3. Session info