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neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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`map_snps_to_genes`: Add *--genes-only* arg #108

Closed bschilder closed 2 years ago

bschilder commented 2 years ago

In the MAGMA manual (page 3) it mentions:

To perform only a gene analysis, with no subsequent gene-set analysis, the --genes-only flag can be added. This suppresses the creation of the .genes.raw file, and significantly reduces the running time and memory required.

For studies where all we care about are getting the weight gene profiles for each GWAS, would be nice to provide this option to speed up analysis.

bschilder commented 2 years ago

Now implemented as genes_only=TRUE