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neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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map_snps_to_genes() and get_ctd() related errors #149

Closed zsf123525 closed 7 months ago

zsf123525 commented 7 months ago

Hi, I have encountered two problems. (1) With a normal network ,I have been unable to download the magma_v1.10_win.zip file. Because when I use the gmap_snps_to_genes function it displays the following error message:: Error in download.file(magma_url, destfile = destfile)：download from 'https://ctg.cncr.nl/software/MAGMA/prog//magma_v1.10_win.zip' failed. (2) When using ctd <- MAGMA.Celltyping::get_ctd("ctd_allKI") to import CellType dataset, the following error message occurs: Error in value[[3L]]():! Cannot access release data for repo "neurogenomics/MAGMA_Celltyping". Check that you have provided a .token and that the repo is correctly specified. GitHub API error (401): Bad credentials. What should I do to solve these situations above?

bschilder commented 7 months ago

@zsf123525 you need to set up your GitHub API token https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens