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neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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Magma celltyping on snATAC data #22

Closed prashanthsama1 closed 3 years ago

prashanthsama1 commented 4 years ago

Hi,

I have used the package on scRNA data. I am wondering if I can also use sc/snATAC seq data with the package. I believe the package uses the gene names at some point. So, if I want to use ATAC data how can I proceed. Any insights will be helpful.

Thanks in advance...!!!

bschilder commented 3 years ago

@prashanthsama1, MAGMA.Celltyping does not currently support the use of non scRNA-seq data as cell-type references.