neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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Add functionality to allow magma files to be used when full sumstats no longer available #30

Closed NathanSkene closed 2 years ago

bschilder commented 2 years ago

celltype_associations_pipeline is designed to do exactly this. As long as the genes.raw and gene.out files exist in the appropriate folder structure, the enrichment pipeline will run without any need for the original sumstats.