How to build the single-cell expression matrix

neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics

https://neurogenomics.github.io/MAGMA_Celltyping

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How to build the single-cell expression matrix #4

Closed xiangboyulan closed 5 years ago

xiangboyulan commented 5 years ago

Dear Nathan,

I read the example about MAGMA_celltyping, I can not understand how to build the expression matrix (such as ctd in your data). I only use one brain region, and do not need to merge. Could you give some advice to me? Thank you so much!

Best,

NathanSkene commented 5 years ago

Hi Bo,

The tutorial for building the ctd is associated with the EWCE package:

https://github.com/NathanSkene/EWCE/

Hope that helps,

Nathan