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neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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Move gene coordinate files #85

Closed bschilder closed 2 years ago

bschilder commented 2 years ago

Undocumented non-rds files shouldn't go in data/

‘NCBI36.3.gene.loc’ ‘NCBI37.3.gene.loc’ ‘NCBI38.gene.loc’

bschilder commented 2 years ago

Moving these to piggyback will also help reduce package size.

bschilder commented 2 years ago

Now replaced with get_genomeLocFile: https://github.com/neurogenomics/MAGMA_Celltyping/blob/bschilder_dev/R/get_genomeLocFile.R

See usage here: https://github.com/neurogenomics/MAGMA_Celltyping/blob/2e3b477c0e5b711466b57b52e5a08e6c3afc904e/R/map_snps_to_genes.r#L115

I've removed the NCBI files, but in the Roxygen notes get_genomeLocFile I include permalinks to a version of those files stored in GitHub's history. So we can always get those exact versions back.