neuronets / ams

Automated meningioma segmentation
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ENH: dockerfiles (again) #4

Closed kaczmarj closed 4 years ago

kaczmarj commented 4 years ago

Changes:

  1. use tensorflow/tensorflow:2.3.1-gpu as base image for Dockerfile.gpu to ensure that GPU dependencies are correct for the installed version of tensorflow.
  2. add --cleanenv to the singularity commands to ensure that user variables (i.e., FREESURFER_HOME) do not interfere with the containers variables.
  3. fix for etelemetry: use neuronets/ams instead of neuronets/kwyk