neuronets / kwyk

Knowing what you know - Bayesian brain parcellation
https://doi.org/10.3389/fninf.2019.00067
Apache License 2.0
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environment variables in singularity #13

Closed dnkennedy closed 4 years ago

dnkennedy commented 5 years ago

In trying your singularity example (on an AWS GPU-enabled NITRC-CE-Lite instance) I had to include the "-e" flag to the singularity run command :

i.e. singularity run -e -B $(pwd):/data -W /data --nv kwyk_latest-gpu.sif -m bvwn_multi_prior --save-variance --save-entropy anat.nii output

IF the "-e" doesn't hurt anything, perhaps adding that to the README example would be helpful.