neuronflow / BraTS-Toolkit

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
https://www.frontiersin.org/articles/10.3389/fnins.2020.00125/full
GNU Affero General Public License v3.0
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BraTS-Preprocessor linux: outdated problem #10

Closed chocolatetoast-chiu closed 2 years ago

chocolatetoast-chiu commented 3 years ago

Hello!

When I try to run the 0_preprocessor_batch.py code to preprocess my data. The server keeps sending this error message back to the terminal after connection established! sid: c0a0fd2c7f8b4af483c22721fa3fcbcd sid: c0a0fd2c7f8b4af483c22721fa3fcbcd status reveived: {'message': 'clientID json generation queued!', 'code': 201}:

It said that Your client version 0.0.1 is outdated. Please download version unknown client from: https://neuronflow.github.io/brats-preprocessor/

I tried to download the preprocessor from https://github.com/neuronflow/BraTS-Preprocessor, and unzip BraTS_Preprocessor-linux-x64 which is inside the downloads folder. But this error still existed.

Thank you in advance! I will be very appreciative if you can help me to solve this problem.

neuronflow commented 3 years ago

Hi, very weird. could you provide more details please? how did you install? how do you run it?

I believe the GUI version might be outdated, hopefully I can compile an update soon.

chocolatetoast-chiu commented 3 years ago

I believed that I install this repository through the command you provided in README. And I run the code by python 0_preprocessing_batch.py. But the weird thing is that after this error message, stop_docker() is performed to stop the whole preprocessing, so after I comment the posterior code inside preprocessor.py def outdated(data): like this

#self.sio.disconnect()
#stop_docker()
#sys.exit(0)

I can run the preprocessing even though the outdated message is printed.

chocolatetoast-chiu commented 3 years ago

Hi!

Just want to update that I can run the whole preprocessing without an error when I re-install BTK source under the python 3.8 environment.

neuronflow commented 2 years ago

Thank you for reporting back :)