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neuronflow / BraTS-Toolkit

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
https://www.frontiersin.org/articles/10.3389/fnins.2020.00125/full
GNU Affero General Public License v3.0
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brats-preprocess stuck on "status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}" #20

Closed samuelholly closed 8 months ago

samuelholly commented 1 year ago

Hello,

I wanted to ask what I can do when the brats-preprocess CLI command hangs on the

"status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}" message.

A firewall warning pops-up during the processing. Can the hang-up be caused by not clicking "allow access" in the warning?

I'm running WSL2 Ubuntu 18.04 on a workstation:

CPU: Intel(R) Xeon(R) W-1270 CPU @ 3.40GHz (8 cores, 16 threads) RAM: 48 GB (Intel Optane) GPU: Quadro RTX 4000

The command line call: brats-preprocess -t1 t1.nii -t1c t1_ce.nii -t2 t2.nii -fla flair.nii -o brats_preprocess_out/ --gpu

Thank you in advance.

Best regards

neuronflow commented 1 year ago

Thanks for your interest in BTK. Yes, it is likely that your firewall intercepts the communication between the front- and backend.

neuronflow commented 8 months ago

closed until more details are provided

neuronflow commented 8 months ago

This is most likely a duplicate of: https://github.com/neuronflow/BraTS-Toolkit/issues/18

-> try running with .nii.gz files until we have a fix :)