neuronflow / BraTS-Toolkit

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
https://www.frontiersin.org/articles/10.3389/fnins.2020.00125/full
GNU Affero General Public License v3.0
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Brats toolkit : status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'} #31

Closed DanielaTalba1 closed 9 months ago

DanielaTalba1 commented 9 months ago

When I run the preprocessing_single.py code, the code remains as it is, and my data[] stays empty, as if it doesn't see the data. However, when I use your data named "OtherExampleFromTCIA" and "TCGA-DU-7294," the code works normally. Does anyone know why, please?

docker started! connection established! sid: 701ed21c913d43d89a80bc96cc3ab700 sid: 701ed21c913d43d89a80bc96cc3ab700 status reveived: {'code': 201, 'message': 'clientID json generation queued!'} status reveived: {'code': 202, 'message': 'client ID json generation finished!'} sending input inspection request! status reveived: {'code': 201, 'message': 'input inspection queued!'} status reveived: {'code': 202, 'message': 'input inspection finished!', 'data': []} input inspection found the following exams: [] press "y" to continue or "n" to scan the input folder again.y sending processing request! status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}

neuronflow commented 9 months ago

what is the structure of your data in particular the file endings?

DanielaTalba1 commented 9 months ago

@neuronflow hello thank you for your reply my code finally worked.

neuronflow commented 9 months ago

closing as of https://github.com/neuronflow/BraTS-Toolkit/issues/32