Open nrnhines opened 1 month ago
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The many CI failures are perplexing. On my machine I have similar errors for ninja test
for this pr but also for the master. ie. Ubuntu 24.04, gcc version 13.2.0 (Ubuntu 13.2.0-23ubuntu4), Python 3.12.3 (via pyenv)
The following tests FAILED:
3 - unit_tests::benchmarks (Failed)
86 - parallel::subworld (Failed)
88 - parallel::netpar (Failed)
89 - parallel::bas (Failed)
90 - parallel::nrntest_fast (Failed)
92 - nmodl_tests::test_disc (Failed)
93 - nmodl_tests::test_function_table (Failed)
94 - nmodl_tests::test_kinetic (Failed)
123 - pyinit::nrniv_py3.12_python_check_sys_path (Failed)
125 - pyinit::nrniv_py3.12_nrnpython_check_sys_path (Failed)
127 - pyinit::nrniv_py3.12_python_check_sys_prefix (Failed)
129 - pyinit::nrniv_py3.12_nrnpython_check_sys_prefix (Failed)
131 - pyinit::nrniv_py3.12_python_check_sys_exec_prefix (Failed)
133 - pyinit::nrniv_py3.12_nrnpython_check_sys_exec_prefix (Failed)
159 - pyinit::nrniv_pydef_python_check_sys_path (Failed)
161 - pyinit::nrniv_pydef_nrnpython_check_sys_path (Failed)
163 - pyinit::nrniv_pydef_python_check_sys_prefix (Failed)
165 - pyinit::nrniv_pydef_nrnpython_check_sys_prefix (Failed)
167 - pyinit::nrniv_pydef_python_check_sys_exec_prefix (Failed)
169 - pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix (Failed)
194 - external_nrntest (Failed)
207 - testcorenrn_vecevent::compare_results (Failed)
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Issues
1 New issue
0 Accepted issues
Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code
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Closes #2973
The logical connection after import3d neurolucida3 file should be invariant on
h.define_shape()
. That is, the location of the rest of the tree should not change relative to the soma.This is accomplished by updating the logical connection point of dendrites at instantiation when the actual 3-d soma section points are known (after processing the contour).
The two (related) substantive changes in this PR are noted in the comments.
Test added