Closed valosekj closed 1 year ago
Both git annex get
and bids-validator .
are happy with the changes. Merged into master!
@mguaypaq Thank you!
JSON file is missing
Ahh, good catch! Thank you!
JSON files added in e54433f222965fb0b33fb62298d2cab7b7138711
commit to the jv/add_lesion-manual3_to_derivatives
branch.
Merged again.
Based on a discussion with @jcohenadad and @mchen1110, I added the
lesion-manual3.nii.gz
segmentation to the git-annexbasel-mp2rage/derivatives
. My branch is namedjv/add_lesion-manual3_to_derivatives
.Specifically, I added the following 30 files:
``` $ cd basel-mp2rage/derivatives/labels $ ls -1 sub-P0*/anat/*manual3.nii.gz sub-P001/anat/sub-P001_UNIT1_lesion-manual3.nii.gz sub-P002/anat/sub-P002_UNIT1_lesion-manual3.nii.gz sub-P003/anat/sub-P003_UNIT1_lesion-manual3.nii.gz sub-P004/anat/sub-P004_UNIT1_lesion-manual3.nii.gz sub-P005/anat/sub-P005_UNIT1_lesion-manual3.nii.gz sub-P006/anat/sub-P006_UNIT1_lesion-manual3.nii.gz sub-P007/anat/sub-P007_UNIT1_lesion-manual3.nii.gz sub-P010/anat/sub-P010_UNIT1_lesion-manual3.nii.gz sub-P011/anat/sub-P011_UNIT1_lesion-manual3.nii.gz sub-P012/anat/sub-P012_UNIT1_lesion-manual3.nii.gz sub-P013/anat/sub-P013_UNIT1_lesion-manual3.nii.gz sub-P014/anat/sub-P014_UNIT1_lesion-manual3.nii.gz sub-P015/anat/sub-P015_UNIT1_lesion-manual3.nii.gz sub-P016/anat/sub-P016_UNIT1_lesion-manual3.nii.gz sub-P017/anat/sub-P017_UNIT1_lesion-manual3.nii.gz sub-P019/anat/sub-P019_UNIT1_lesion-manual3.nii.gz sub-P021/anat/sub-P021_UNIT1_lesion-manual3.nii.gz sub-P022/anat/sub-P022_UNIT1_lesion-manual3.nii.gz sub-P023/anat/sub-P023_UNIT1_lesion-manual3.nii.gz sub-P024/anat/sub-P024_UNIT1_lesion-manual3.nii.gz sub-P025/anat/sub-P025_UNIT1_lesion-manual3.nii.gz sub-P026/anat/sub-P026_UNIT1_lesion-manual3.nii.gz sub-P027/anat/sub-P027_UNIT1_lesion-manual3.nii.gz sub-P028/anat/sub-P028_UNIT1_lesion-manual3.nii.gz sub-P029/anat/sub-P029_UNIT1_lesion-manual3.nii.gz sub-P030/anat/sub-P030_UNIT1_lesion-manual3.nii.gz sub-P031/anat/sub-P031_UNIT1_lesion-manual3.nii.gz sub-P033/anat/sub-P033_UNIT1_lesion-manual3.nii.gz sub-P034/anat/sub-P034_UNIT1_lesion-manual3.nii.gz sub-P035/anat/sub-P035_UNIT1_lesion-manual3.nii.gz ```TODO:
lesion-manual3.nii.gz
segmentations were obtained to theREADME
- done by @mchen1110Related to https://github.com/ivadomed/model_seg_ms_mp2rage/issues/13