Subject folders not BIDS compliant sct-testing-large

[NathanMolinier]

Description

For some subjects in sct-testing-large, the session name was added to the subject name leading to errors in some scripts like manual-correction

Therefore, the same subject is appearing multiple times as if it was multiple subjects

[valosekj]

Good catch!

Indeed, ses folders are missing and subject folders incorrectly contains ses:

$ cd sct-testing-large 
$ tree sub-zurichMPM0*
sub-zurichMPM01_ses-01
└── anat
    ├── sub-zurichMPM01_ses-01_RFSC_MT.json
...

The correct directory structure should be:

$ tree sub-zurichMPM0*
sub-zurichMPM01
└── ses-01
    └── anat
        ├── sub-zurichMPM01_ses-01_RFSC_MT.json
...

[mguaypaq]

I believe the hierarchy is sub-*/ses-*/anat/...; with the session folders directly inside the subject folders, and no anat in between.

[NathanMolinier]

You are right, we have this hierarchy in Canproco I believe

[valosekj]

I believe the hierarchy is sub-*/ses-*/anat/...; with the session folders directly inside the subject folders, and no anat in between.

You are right! Sorry for this! I overlooked this. I have fixed my comment.