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neuropoly / data-management

Repo that deals with datalad aspects for internal use
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Add brain segmentations on `whole-spine` dataset #330

Open Nilser3 opened 3 months ago

Nilser3 commented 3 months ago

Description

I am currently segmenting whole-spine dataset with samseg tool, and would like to add these masks to the git-annex.

Labels namming

sub-amuAL_T1w_label-brain_dseg.nii.gz

Related issues:

#6

Nilser3 commented 3 months ago

Hi @mguaypaq Could you give me W access to whole-spine dataset please

Thanks you

mguaypaq commented 3 months ago

@Nilser3 I just gave you write access.

Nilser3 commented 3 months ago

Hi @CharlesPageot

Brain segmentations have been done! are currently in my branch: nlm/brain-segmentation-synthseg

Issues

The subject sub-unfErssm001 has a cropped brain, so it could not be segmented (see image). image

and subject sub-unfErssm021 has no T1w image, so it was not segmented.

CharlesPageot commented 3 months ago

Super! Thank you Nilser :)