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neuropoly / data-management

Repo that deals with datalad aspects for internal use
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git annex sync -- content failed on uk-biobank-processed #52

Closed sandrinebedard closed 3 years ago

sandrinebedard commented 3 years ago

Description

I am trying to add processed images to datasets/uk-biobank-processed. I followed these instructions. Everything went smoothly until git annex sync --content. This is the error that I got when running git annex sync --content: (this is the end only, I added bellow my comlpete terminal history)

  transfer failed
failed
copy sub-1141841/anat/sub-1141841_T2w.nii.gz
  Lost connection (fd:14: hGetChar: end of file)
(unable to check origin) failed
push origin
FATAL: W any datasets/uk-biobank-processed sandrine DENIED by fallthru
(or you mis-spelled the reponame)
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

FATAL: W any datasets/uk-biobank-processed sandrine DENIED by fallthru(or you mis-spelled the reponame)fatal: Could not read from remote repository.Please make sure you have the correct access rightsand the repository exists.  Pushing to origin failed.
failed
git-annex: sync: 1301 failed

Here is my complete terminal history from git add to git annex sync --content:

terminal_joplin_git_annex.txt

kousu commented 3 years ago

Ceci est une très bon reportage. Je m'occupe !

kousu commented 3 years ago

Easy fix: you lacked permission.

I fixed it with:

$ ssh git@localhost perms datasets/uk-biobank-processed + WRITERS sandrine

Thanks for the reminder. I've added that part to this section in #35:

https://github.com/neuropoly/data-management/blob/c521bc7/internal-server.md#upload https://github.com/neuropoly/data-management/blob/c521bc7/internal-server.md#permissions

sandrinebedard commented 3 years ago

Great! Thanks, I'll test it out again!

sandrinebedard commented 3 years ago

hmm, I don't seem to have writing permission for uk-biobank-processed :

(base) sebeda@joplin:~/data_nvme_sebeda/uk-biobank-processed$ ssh git@data.neuro.polymtl.ca info
hello sandrine, this is git@data running gitolite3 3.6.11-2 (Debian) on git 2.27.0

 R   C  datasets/..*
 R      datasets/data-single-subject_DO-NOT-USE
 R      datasets/sct-testing-large
 R      datasets/t1
 R      datasets/t2
 R      datasets/t3
 R      datasets/t4
 R      datasets/uk-biobank
 R      datasets/uk-biobank-processed
kousu commented 3 years ago

>.< sorry! slippy 3am fingers. This inspired me to clean up a bunch of stuff I'd been putting off here and while doing https://github.com/neuropoly/data-management/issues/19#issuecomment-805590660 I erased your permission again.

It should be back now!

sandrinebedard commented 3 years ago

it is back! Everything seems to work!