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Estimate cord atrophy using SoftSeg #8

Closed joshuacwnewton closed 1 year ago

joshuacwnewton commented 1 year ago

NB: This issue has been migrated from the spinalcordtoolbox repository: https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3207

Context

Estimating subtle cord atrophy is important in MS. Recent work [LINK TO PAUL REPOS] introduced a pipeline to quantify the sensitivity of "hard" segmentation to detect small atrophies. The pipeline is based on a global resizing of the image. With the recent introduction of SoftSeg [REF], which produces soft segmentations, we would like to investigate whether CSA measured from soft segmentation is more sensitive to detect subtle atrophy.

Methodology

Bibliography