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neuropoly / template

A framework for creating unbiased MRI templates of the spinal cord
MIT License
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Error while running `generate_template.py` for template generation after following the current documentation #78

Closed rohanbanerjee closed 11 months ago

rohanbanerjee commented 1 year ago

Description:

The current README mentions that after we run the preprocess_normalize.py successfully, we run the command python -m scoop -n N -vvv generate_template.py to generate the template. After running the mentioned command on Alliance Canada, I get the following error:

AttributeError: module 'iplScoopGenerateModel' has no attribute 'generate_nonlinear_model_csv'

This error might be due to versioning issue (change in structure) of the repo: https://github.com/vfonov/nist_mni_pipelines.git

Investigating this further.

rohanbanerjee commented 1 year ago

This was a versioning issue and also due to some steps that weren't mentioned in the README (fixed in #79)