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neuropoly / template

A framework for creating unbiased MRI templates of the spinal cord
MIT License
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Link not working to sample dataset #8

Open NadiaBlostein opened 1 year ago

NadiaBlostein commented 1 year ago

Page Not Found: A small dataset, containing 5 T1w and T2w images, is available [here](https://osf.io/h73cm/) and is used as example for preprocessing.

jcohenadad commented 1 year ago

Sorry I don't remember what dataset it was. @benjamindeleener do you?

Alternatively, we can point to another small dataset. Eg, i'm thinking maybe a subset of the spine-generic dataset, or the 3 subjects from the SCT course (https://github.com/spinalcordtoolbox/sct_tutorial_data/tree/master/multi_subject/data) (although it has MT images which we don't need here)

benjamindeleener commented 1 year ago

I think it was a sub-sample of the PAM50 dataset, which was probably removed from OSF. Pointing to another dataset would be a good solution. It would be good if it has large coverage.

rohanbanerjee commented 11 months ago

We use the Dog dataset and the Pediatric dataset for testing. We could perhaps use a subset of these datasets or use the a subset of the spine-generic dataset as mentioned above.