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neuroquery / pubget

Collecting papers from PubMed Central and extracting text, metadata and stereotactic coordinates.
https://neuroquery.github.io/pubget/
MIT License
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Suggestion for additional journals #31

Closed adelavega closed 1 year ago

adelavega commented 1 year ago

Here's some journals that may be helpful in the example query. They were used by NeuroSynth previously, or I found them when updating more recently:

("Frontiers in aging neuroscience"[Journal]) OR ("Hippocampus"[Journal]) OR ("Hormones and behavior"[Journal]) OR ("Journal of computational neuroscience"[Journal]) OR ("Journal of neurodevelopmental disorders"[Journal]) OR ("Journal of the neurological sciences"[Journal]) OR ("J Neuroimaging"[Journal]) OR ("Learning & behavior"[Journal])
adelavega commented 1 year ago

Also, it may be helpful to add "PET" since those studies can report coordinates as well

jeromedockes commented 1 year ago

thanks! adding "functional MRI" as you had suggested I got 10.6K studies. I'll try with the new journals and let you know. (keeping this open until the example query is updated in the repo)

jeromedockes commented 1 year ago

trying to grap PET studies is a good idea but we may have to find a more selective query. for example if I try "PET[Abstract]" in the online search I get a lot of studies that are not related to neuroscience -- and a surprising number of studies about pets (animals) :sweat_smile:

adelavega commented 1 year ago

We could use a MeSH term: "Positron-Emission Tomography/methods"[MAJR]

This may also be a useful MeSH term to add: "Brain Mapping"[MAJR]

adelavega commented 1 year ago

Actually, I think PET will draw in too many non Cognitive Neuroscience studies, so this may be a better term to use: "Cognition Disorders/diagnostic imaging"[MAJR]

jeromedockes commented 1 year ago

I think we can close this as the example query has been updated. thanks for the added query terms!