The PR fixed a minor bug in the plot_umap function where the sc object is wrongly named when monocle3 or SingleCellExperiment class object is used. It also change the guides argument from fill = FALSE to fill = "none" to avoid the deprecation warning.
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> =
"none")` instead.
Edit: re 551f9e0, it adds the missing row names to red_coord if sc is a SingleCellExperiment object, so that the barcode column can be correctly created when calling the rownames_to_column function in:
The PR fixed a minor bug in the
plot_umapfunction where thescobject is wrongly named whenmonocle3orSingleCellExperimentclass object is used. It also change the guides argument fromfill = FALSEtofill = "none"to avoid the deprecation warning.Edit: re 551f9e0, it adds the missing row names to
red_coordifscis aSingleCellExperimentobject, so that thebarcodecolumn can be correctly created when calling therownames_to_columnfunction in:https://github.com/neurorestore/Augur/blob/3b51e4ed004ef6351f6930c1d1b44eed48246f1e/R/plot_umap.R#L128-L134