Error in if (!(layer %in% slotNames(x = object))) { : argument is of length zero

neurorestore / Augur

Cell type prioritization in single-cell data

MIT License

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Error in if (!(layer %in% slotNames(x = object))) { : argument is of length zero #32

Open Eunice0519 opened 5 months ago

Eunice0519 commented 5 months ago

I got this error when I try to run calculate_auc.

Error in if (!(layer %in% slotNames(x = object))) { : argument is of length zero

Does this have something to do with the updated version of Seurat? As Augur is unable to identify the data columns.

AlanTeoYueYang commented 2 weeks ago

Hi Eunice,

I managed to make Augur run with the Seurat 5.0.1 with just a warning message. Can you share with me your data so I can see what might be the issue? Thanks.

Best, Alan